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Rapid TCR:Epitope Ranker (RAPTER): a primary human T cell reactivity screening assay pairing epitope and TCR at single cell resolution

학술저널

issue: Scientific Reports. 13(1)
Author: Deering, Raquel P.^{Aff1, IDs41598023357107_cor1}
Blumenberg, Lili
Li, Lianjie
Dhanik, Ankur
Jeong, Se
Pourpe, Stephane
Song, Hang
Boucher, Lauren
Ragunathan, Shoba
Li, Yanxia
Zhong, Maggie
Kuhnert, Jessica
Adler, Christina
Hawkins, Peter
Gupta, Namita T.
Moore, Michael
Ni, Min
Hansen, Johanna
Wei, Yi
Thurston, Gavin
DB Label: Database : Springer Nature Journals

원문보기: Full Text (원문보기) Full Text (원문보기) OA (Springer) OA (Nature) 등재 - Web of Science (SCIE) 등재 - SCOPUS 조회 - Impact Factor (JCR)

Spontaneous tumor regression mediated by human T cells in a humanized immune system mouse model

학술저널

issue: Communications Biology. 6(1)
Author: Patel, A. K.
Dhanik, Ankur
Lim, Wei Keat
Adler, Christina
Ni, Min
Wei, Yi
Zhong, Maggie
Nguyen, Cindy
Zhong, Jun
Lu, Yi-Fen
Thurston, Gavin
Macdonald, Lynn
Murphy, Andrew
Gurer, Cagan
Frleta, Davor^{Aff1, IDs4200302304824z_cor15}
DB Label: Database : Springer Nature Journals

원문보기: OA (Springer) OA (Nature) 등재 - Web of Science (SCIE) 등재 - SCOPUS 조회 - Impact Factor (JCR)

A single-cell map of dynamic chromatin landscapes of immune cells in renal cell carcinoma

학술저널

issue: Nature Cancer. 3(7):885-898
Author: Kourtis, Nikos
Wang, Qingqing
Wang, Bei
Oswald, Erin
Adler, Christina
Cherravuru, Samvitha
Malahias, Evangelia
Zhang, Lance
Golubov, Jacquelynn
Wei, Qiaozhi
Lemus, Samantha
Ni, Min
Ding, Yueming
Wei, Yi
Atwal, Gurinder S.
Thurston, Gavin
Macdonald, Lynn E.
Murphy, Andrew J.
Dhanik, Ankur
Sleeman, Matthew A.
Tykodi, Scott S.
Skokos, Dimitris^{Aff1, IDs43018022003910_cor22}
DB Label: Database : Springer Nature Journals

원문보기: 등재 - Web of Science (SCIE) 등재 - SCOPUS 조회 - Impact Factor (JCR) 원문복사신청 - RISS

Auto dock-based incremental docking protocol to improve docking of large ligands

회의자료

issue: 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops Bioinformatics and Biomedicine Workshops (BIBMW), 2012 IEEE International Conference on. :48-55 Oct, 2012
Author: Dhanik, Ankur
McMurray, John S
Kavraki, Lydia
DB Label: Database : IEEE Xplore Digital Library

원문보기: Full Text (IEEE)

On modeling peptidomimetics in complex with the SH2 domain of Stat3

회의자료

issue: 2011 Annual International Conference of the IEEE Engineering in Medicine and Biology Society Engineering in Medicine and Biology Society, EMBC, 2011 Annual International Conference of the IEEE. :3229-3232 Aug, 2011
Author: Dhanik, Ankur
McMurray, John S.
Kavraki, Lydia
DB Label: Database : IEEE Xplore Digital Library

원문보기: Full Text (IEEE)

Prediction of overall survival for patients with metastatic castration-resistant prostate cancer: development of a prognostic model through a crowdsourced challenge with open clinical trial data

학술저널

issue: In The Lancet Oncology January 2017 18(1):132-142
Author: Abdallah, Kald
Aittokallio, Tero
Airola, Antti
Anghe, Catalina
Azima, Helia
Baertsch, Robert
Ballester, Pedro J
Bare, Chris
Bhandari, Vinayak
Bot, Brian M
Dang, Cuong C
Dunbar, Maria Bekker-Nielsen
Buchardt, Ann-Sophie
Buturovic, Ljubomir
Cao, Da
Chalise, Prabhakar
Cho, Junwoo
Chu, Tzu-Ming
Coley, R Yates
Conjeti, Sailesh
Correia, Sara
Costello, James C
Dai, Ziwei
Dai, Junqiang
Dargatz, Philip
Delavarkhan, Sam
Deng, Detian
Dhanik, Ankur
Du, Yu
Elangovan, Aparna
Ellis, Shellie
Elo, Laura L
Espiritu, Shadrielle M
Fan, Fan
Farshi, Ashkan B
Freitas, Ana
Fridley, Brooke
Friend, Stephen
Fuchs, Christiane
Gofer, Eyal
Peddinti, Gopalacharyulu
Graw, Stefan
Greiner, Russ
Guan, Yuanfang
Guinney, Justin
Guo, Jing
Gupta, Pankaj
Guyer, Anna I
Han, Jiawei
Hansen, Niels R
Chang, Billy HW
Hirvonen, Outi
Huang, Barbara
Huang, Chao
Hwang, Jinseub
Ibrahim, Joseph G
Jayaswa, Vivek
Jeon, Jouhyun
Ji, Zhicheng
Juvvadi, Deekshith
Jyrkkiö, Sirkku
Kanigel-Winner, Kimberly
Katouzian, Amin
Kazanov, Marat D
Khan, Suleiman A
Khayyer, Shahin
Kim, Dalho
Golinska, Agnieszka K
Koestler, Devin
Kokowicz, Fernanda
Kondofersky, Ivan
Krautenbacher, Norbert
Krstajic, Damjan
Kumar, Luke
Kurz, Christoph
Kyan, Matthew
Laajala, Teemu D
Laimighofer, Michael
Lee, Eunjee
Lesinski, Wojciech
Li, Miaozhu
Li, Ye
Lian, Qiuyu
Liang, Xiaotao
Lim, Minseong
Lin, Henry
Lin, Xihui
Lu, Jing
Mahmoudian, Mehrad
Manshaei, Roozbeh
Meier, Richard
Miljkovic, Dejan
Mirtti, Tuomas
Mnich, Krzysztof
Navab, Nassir
Neto, Elias C
Newton, Yulia
Norman, Thea
Pahikkala, Tapio
Pal, Subhabrata
Park, Byeongju
Patel, Jaykumar
Pathak, Swetabh
Pattin, Alejandrina
Ankerst, Donna P
Peng, Jian
Petersen, Anne H
Philip, Robin
Piccolo, Stephen R
Pölsterl, Sebastian
Polewko-Klim, Aneta
Rao, Karthik
Ren, Xiang
Rocha, Miguel
Rudnicki, Witold R.
Ryan, Charles J
Ryu, Hyunnam
Sartor, Oliver
Scherb, Hagen
Sehgal, Raghav
Seyednasrollah, Fatemeh
Shang, Jingbo
Shao, Bin
Shen, Liji
Sher, Howard
Shiga, Motoki
Sokolov, Artem
Söllner, Julia F
Song, Lei
Soule, Howard
Stolovitzky, Gustavo
Stuart, Josh
Sun, Ren
Sweeney, Christopher J
Tahmasebi, Nazanin
Tan, Kar-Tong
Tomaziu, Lisbeth
Usset, Joseph
Vang, Yeeleng S
Vega, Roberto
Vieira, Vitor
Wang, David
Wang, Difei
Wang, Junmei
Wang, Lichao
Wang, Sheng
Wang, Tao
Wang, Yue
Wolfinger, Russ
Wong, Chris
Wu, Zhenke
Xiao, Jinfeng
Xie, Xiaohui
Xie, Yang
Xin, Doris
Yang, Hojin
Yu, Nancy
Yu, Thomas
Yu, Xiang
Zahedi, Sulmaz
Zanin, Massimiliano
Zhang, Chihao
Zhang, Jingwen
Zhang, Shihua
Zhang, Yanchun
Zhou, Fang Liz
Zhu, Hongtu
Zhu, Shanfeng
Zhu, Yuxin
Winner, Kimberly Kanigel
Bare, J Christopher
Neto, Elias Chaibub
Peddinti, Gopal
Scher, Howard I
DB Label: Database : ScienceDirect

원문보기: Full Text (ScienceDirect) Full Text (Clinical Key) 등재 - Web of Science (SCIE) 등재 - SCOPUS 조회 - Impact Factor (JCR)

HLA-DR-restricted CD4 T cell responses to KRAS G12C in healthy donors linked to bacterial mimotope: lessons for KRAS neoantigen vaccines in cancer patients

학술저널

issue: CANCER RESEARCH; APR 1 2023, 83 7, 3p. Supplement: S
Author: Palmer, Christine D.
Hart, Meghan G.
Kounlavouth, Sonia
Venkatraman, Harshni
Kraemer, Lauren D.
Marrali, Martina
Dominguez, Calixto
Chowdhury, Fatema Z.
Jaroslavsky, Jason R.
Arcebuche, Lindsey
Hernandez, Lorenzo
Adeoye, Bukola
Cuison, Severino
Rappaport, Amy R.
Boucher, Greg
Lane, Monica
Rotunno, Melissa
Avocetien, Kenneth
Sousa, Leiliane
Puccia, Chris
Likes, Molly
Vegesna, Rahul
Zhou, Rita
Mantilla, Alexis
Davis, Matthew J.
Dhanik, Ankur
Johnson, Melissa
Ferguson, Andrew R.
Jooss, Karin
DB Label: Database : Science Citation Index Expanded

원문보기: Full Text (AACR) 등재 - Web of Science 등재 - SCOPUS 조회 - Impact Factor (JCR)

Disease monitoring with comprehensive genomics provides evidence of mechanism of action and immune evasion in patients receiving an individualized neoantigen cancer vaccine

학술저널

issue: CANCER RESEARCH; APR 1 2023, 83 7, 3p. Supplement: S
Author: Schenk, Desiree
Zhou, Rita
Petrillo, Olivia
Mantilla, Alexis
do Valle, Italo Faria
Maron, Steven
Henick, Brian S.
Liao, Chih-Yi
Catenacci, Daniel V. T.
Roychowdhury, Sameek
Solomon, Benjamin
Spira, Alexander I.
Dhanik, Ankur
Fergusson, Andrew R.
Jooss, Karin
Davis, Matthew
DB Label: Database : Science Citation Index Expanded

원문보기: Full Text (AACR) 등재 - Web of Science 등재 - SCOPUS 조회 - Impact Factor (JCR)

Language modeling of peptide-HLA interactions achieves state-of-the-art performance on prediction of peptide presentation by HLA Class II

학술저널

issue: CANCER RESEARCH; APR 1 2023, 83 7, 3p. Supplement: S
Author: Sprague, Daniel
Klein, Joshua
do Valle, Italo Faria
Petrillo, Olivia
Rotunno, Melissa
Davis, Matthew
Lane, Monica
Jooss, Karin
Dhanik, Ankur
DB Label: Database : Science Citation Index Expanded

원문보기: Full Text (AACR) 등재 - Web of Science 등재 - SCOPUS 조회 - Impact Factor (JCR)

Efficient Algorithms to Explore Conformation Spaces of Flexible Protein Loops

학술저널

issue: IEEE/ACM Transactions on Computational Biology and Bioinformatics IEEE/ACM Trans. Comput. Biol. and Bioinf. Computational Biology and Bioinformatics, IEEE/ACM Transactions on. 5(4):534-545 Jan, 2008
Author: Yao, Peggy
Dhanik, Ankur
Marz, Nathan
Propper, Ryan
Kou, Charles
Liu, Guanfeng
van den Bedem, Henry
Latombe, Jean-Claude
Halperin-Landsberg, Inbal
Altman, Russ B.
DB Label: Database : IEEE Xplore Digital Library