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Guidelines for releasing a variant effect predictor

보고서

Author: Livesey, Benjamin J.
Badonyi, Mihaly
Dias, Mafalda
Frazer, Jonathan
Kumar, Sushant
Lindorff-Larsen, Kresten
McCandlish, David M.
Orenbuch, Rose
Shearer, Courtney A.
Muffley, Lara
Foreman, Julia
Glazer, Andrew M.
Lehner, Ben
Marks, Debora S.
Roth, Frederick P.
Rubin, Alan F.
Starita, Lea M.
Marsh, Joseph A.
DB Label: Database : arXiv

원문보기: Open Access (Arxiv)

Uncovering biomarker genes with enriched classification potential from Hallmark gene sets

학술저널

issue: Scientific Reports. 9(1)
Author: Targonski, Colin A.
Shearer, Courtney A.
Shealy, Benjamin T.
Smith, Melissa C.
Feltus, F. Alex^{Aff2, Aff3, Aff4}
DB Label: Database : Springer Nature Journals

원문보기: Full Text (원문보기) Full Text (원문보기) OA (Springer) OA (Nature) 등재 - Web of Science (SCIE) 등재 - SCOPUS 조회 - Impact Factor (JCR)

Evaluation of Homology-Independent CRISPR-Cas9 Off-Target Assessment Methods

학술저널

issue: CRISPR JOURNAL; DEC 2020, 3 6, p440-p453, 14p.
Author: Chaudhari, Hemangi G.
Penterman, Jon
Whitton, Holly J.
Spencer, Sarah J.
Flanagan, Nicole
Zhang, Maria C. Lei
Huang, Elaine
Khedkar, Aditya S.
Toomey, J. Mike
Shearer, Courtney A.
Needham, Alexander W.
Ho, Tony W.
Kulman, John D.
Cradick, T. J.
Kernytsky, Andrew
DB Label: Database : Science Citation Index Expanded

원문보기: 등재 - Web of Science 등재 - SCOPUS 조회 - Impact Factor (JCR)

Poor feed efficiency in sheep is associated with several structural abnormalities in the community metabolic network of their ruminal microbes

학술저널

issue: JOURNAL OF ANIMAL SCIENCE; JUN 2018, 96 6, p2113-p2124, 12p.
Author: Patil, Rocky D.
Ellison, Melinda J.
Wolff, Sara M.
Shearer, Courtney
Wright, Anna M.
Cockrum, Rebecca R.
Austin, Kathy J.
Lamberson, William R.
Cammack, Kristi M.
Conant, Gavin C.
DB Label: Database : Science Citation Index Expanded

원문보기: Full Text (OUP) Full Text (OUP Near Archive) 등재 - Web of Science 등재 - SCOPUS 조회 - Impact Factor (JCR) 원문복사신청 - FRIC 원문복사신청 - RISS

Guidelines for releasing a variant effect predictor.

issue: ArXiv [ArXiv] 2024 Apr 16. Date of Electronic Publication: 2024 Apr 16.
Author: Livesey BJ; MRC Human Genetics Unit, Institute of Genetics and Cancer, University of Edinburgh, Edinburgh, UK.
Badonyi M; MRC Human Genetics Unit, Institute of Genetics and Cancer, University of Edinburgh, Edinburgh, UK.
Dias M; Centre for Genomic Regulation (CRG),The Barcelona Institute of Science and Technology, Barcelona, Spain.
Frazer J; Centre for Genomic Regulation (CRG),The Barcelona Institute of Science and Technology, Barcelona, Spain.
Kumar S; Department of Medical Biophysics, University of Toronto; Princess Margaret Cancer Centre, University Health Network, Toronto, Ontario, Canada.
Lindorff-Larsen K; Linderstrøm-Lang Centre for Protein Science, Department of Biology, University of Copenhagen, Copenhagen, Denmark.
McCandlish DM; Simons Center for Quantitative Biology, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.
Orenbuch R; Department of Systems Biology, Harvard Medical School, Boston, MA, USA.
Shearer CA; Department of Systems Biology, Harvard Medical School, Boston, MA, USA.
Muffley L; Department of Genome Sciences, University of Washington and the Brotman Baty Institute for Precision Medicine, Seattle, WA, USA.
Foreman J; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.
Glazer AM; Vanderbilt University Medical Center, Nashville, TN, USA.
Lehner B; Wellcome Sanger Institute, Cambridge, UK; Universitat Pompeu Fabra (UPF), Barcelona, Spain; Institució Catalana de Recerca i Estudis Avançats (ICREA), Barcelona, Spain.
Marks DS; Department of Systems Biology, Harvard Medical School, Boston, MA, USA.; Broad Institute of MIT and Harvard, Boston, MA, USA.
Roth FP; Department of Computational and Systems Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA.
Rubin AF; Bioinformatics Division, Walter and Eliza Hall Institute of Medical Research; Department of Medical Biology, University of Melbourne, Parkville, Australia.
Starita LM; Department of Genome Sciences, University of Washington and the Brotman Baty Institute for Precision Medicine, Seattle, WA, USA.
Marsh JA; MRC Human Genetics Unit, Institute of Genetics and Cancer, University of Edinburgh, Edinburgh, UK.
DB Label: Database : MEDLINE

Deep generative modeling of the human proteome reveals over a hundred novel genes involved in rare genetic disorders.

issue: Research square [Res Sq] 2024 Jan 04. Date of Electronic Publication: 2024 Jan 04.
Author: Orenbuch R; Marks Group, Department of Systems Biology, Harvard Medical School, Boston, MA, USA.
Kollasch AW; Marks Group, Department of Systems Biology, Harvard Medical School, Boston, MA, USA.
Spinner HD; Marks Group, Department of Systems Biology, Harvard Medical School, Boston, MA, USA.
Shearer CA; Marks Group, Department of Systems Biology, Harvard Medical School, Boston, MA, USA.
Hopf TA; Scientific Consulting, 85435 Erding, Germany.
Franceschi D; Marks Group, Department of Systems Biology, Harvard Medical School, Boston, MA, USA.
Dias M; Dias & Frazer Group, Centre for Genomic Regulation (CRG),The Barcelona Institute of Science and Technology, Barcelona, Spain.; University Pompeu Fabra, Barcelona, Spain.
Frazer J; Dias & Frazer Group, Centre for Genomic Regulation (CRG),The Barcelona Institute of Science and Technology, Barcelona, Spain.; University Pompeu Fabra, Barcelona, Spain.
Marks DS; Marks Group, Department of Systems Biology, Harvard Medical School, Boston, MA, USA.; Broad Institute of MIT and Harvard, Cambridge, MA, USA.
DB Label: Database : MEDLINE

Deep generative modeling of the human proteome reveals over a hundred novel genes involved in rare genetic disorders.

issue: MedRxiv : the preprint server for health sciences [medRxiv] 2023 Nov 28. Date of Electronic Publication: 2023 Nov 28.
Author: Orenbuch R; Marks Group, Department of Systems Biology, Harvard Medical School, Boston, MA, USA.
Kollasch AW; Marks Group, Department of Systems Biology, Harvard Medical School, Boston, MA, USA.
Spinner HD; Marks Group, Department of Systems Biology, Harvard Medical School, Boston, MA, USA.
Shearer CA; Marks Group, Department of Systems Biology, Harvard Medical School, Boston, MA, USA.
Hopf TA; Scientific Consulting, 85435 Erding, Germany.
Franceschi D; Marks Group, Department of Systems Biology, Harvard Medical School, Boston, MA, USA.
Dias M; Dias & Frazer Group, Centre for Genomic Regulation (CRG),The Barcelona Institute of Science and Technology, Barcelona, Spain.; University Pompeu Fabra, Barcelona, Spain.
Frazer J; Dias & Frazer Group, Centre for Genomic Regulation (CRG),The Barcelona Institute of Science and Technology, Barcelona, Spain.; University Pompeu Fabra, Barcelona, Spain.
Marks DS; Marks Group, Department of Systems Biology, Harvard Medical School, Boston, MA, USA.; Broad Institute of MIT and Harvard, Cambridge, MA, USA.
DB Label: Database : MEDLINE

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