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Global diversity and antimicrobial resistance of typhoid fever pathogens: Insights from a meta-analysis of 13,000 Salmonella Typhi genomes.

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issue: ELife [Elife] 2023 Sep 12; Vol. 12. Date of Electronic Publication: 2023 Sep 12.
Author: Carey ME; Cambridge Institute of Therapeutic Immunology and Infectious Disease (CITIID), University of Cambridge School of Clinical Medicine, Cambridge Biomedical Campus, Cambridge, United Kingdom.; Department of Infection Biology, Faculty of Infectious and Tropical Diseases, London School of Hygiene & Tropical Medicine, London, United Kingdom.; IAVI, Chelsea & Westminster Hospital, London, United Kingdom.
Dyson ZA; Department of Infection Biology, Faculty of Infectious and Tropical Diseases, London School of Hygiene & Tropical Medicine, London, United Kingdom.; Department of Infectious Diseases, Central Clinical School, Monash University, Melbourne, Australia.; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, United Kingdom.
Ingle DJ; Department of Microbiology and Immunology at the Peter Doherty Institute for Infection and Immunity, The University of Melbourne, Melbourne, Australia.
Amir A; National Institute of Health, Islamabad, Pakistan.
Aworh MK; Nigeria Field Epidemiology and Laboratory Training Programme, Abuja, Nigeria.; College of Veterinary Medicine, North Carolina State University, Raleigh, United States.
Chattaway MA; United Kingdom Health Security Agency, London, United Kingdom.
Chew KL; National University Hospital, Singapore, Singapore.
Crump JA; Centre for International Health, University of Otago, Dunedin, New Zealand.
Feasey NA; Department of Clinical Sciences, Liverpool School of Tropical Medicine, Liverpool, United Kingdom.; Malawi-Liverpool Wellcome Programme, Kamuzu University of Health Sciences, Blantyre, Malawi.
Howden BP; Centre for Pathogen Genomics, Department of Microbiology and Immunology, University of Melbourne at Doherty Institute for Infection and Immunity, Melbourne, Australia.; Microbiological Diagnostic Unit Public Health Laboratory, The University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne, Australia.
Keddy KH; Independent consultant, Johannesburg, South Africa.
Maes M; Cambridge Institute of Therapeutic Immunology and Infectious Disease (CITIID), University of Cambridge School of Clinical Medicine, Cambridge Biomedical Campus, Cambridge, United Kingdom.
Parry CM; Department of Clinical Sciences, Liverpool School of Tropical Medicine, Liverpool, United Kingdom.
Van Puyvelde S; Cambridge Institute of Therapeutic Immunology and Infectious Disease (CITIID), University of Cambridge School of Clinical Medicine, Cambridge Biomedical Campus, Cambridge, United Kingdom.; University of Antwerp, Antwerp, Belgium.
Webb HE; Centers for Disease Control and Prevention, Atlanta, United States.
Afolayan AO; Global Health Research Unit (GHRU) for the Genomic Surveillance of Antimicrobial Resistance, Faculty of Pharmacy, University of Ibadan, Ibadan, Nigeria.
Alexander AP; Lady Willingdon Hospital, Manali, India.
Anandan S; Department of Clinical Microbiology, Christian Medical College, Vellore, India.
Andrews JR; Division of Infectious Diseases and Geographic Medicine, Stanford University, Stanford, United States.
Ashton PM; Malawi-Liverpool Wellcome Programme, Blantyre, Malawi.; Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Liverpool, United Kingdom.
Basnyat B; Oxford University Clinical Research Unit Nepal, Kathmandu, Nepal.
Bavdekar A; KEM Hospital Research Centre, Pune, India.
Bogoch II; Department of Medicine, Division of Infectious Diseases, University of Toronto, Toronto, Canada.
Clemens JD; International Vaccine Institute, Seoul, Republic of Korea.; International Centre for Diarrhoeal Disease Research, Dhaka, Bangladesh.; UCLA Fielding School of Public Health, Los Angeles, United States.; Korea University, Seoul, Republic of Korea.
da Silva KE; Division of Infectious Diseases and Geographic Medicine, Stanford University, Stanford, United States.
De A; Topiwala National Medical College, Mumbai, India.
de Ligt J; ESR, Institute of Environmental Science and Research Ltd., Porirua, Wellington, New Zealand.
Diaz Guevara PL; Grupo de Microbiologia, Instituto Nacional de Salud, Bogota, Colombia.
Dolecek C; Centre for Tropical Medicine and Global Health, Nuffield Department of Medicine, University of Oxford, Oxford, United Kingdom.; Mahidol Oxford Tropical Medicine Research Unit, Mahidol University, Bangkok, Thailand.
Dutta S; ICMR - National Institute of Cholera & Enteric Diseases, Kolkata, India.
Ehlers MM; Department of Medical Microbiology, Faculty of Health Sciences, University of Pretoria, Pretoria, South Africa.; Department of Medical Microbiology, Tshwane Academic Division, National Health Laboratory Service, Pretoria, South Africa.
Francois Watkins L; Centers for Disease Control and Prevention, Atlanta, United States.
Garrett DO; Sabin Vaccine Institute, Washington DC, United States.
Godbole G; United Kingdom Health Security Agency, London, United Kingdom.
Gordon MA; Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Liverpool, United Kingdom.
Greenhill AR; Federation University Australia, Churchill, Australia.; Papua New Guinea Institute of Medical Research, Goroka, Papua New Guinea.
Griffin C; Centers for Disease Control and Prevention, Atlanta, United States.
Gupta M; Post Graduate Institute of Medical Education and Research, Chandigarh, India.
Hendriksen RS; Technical University of Denmark, Copenhagen, Denmark.
Heyderman RS; Research Department of Infection, Division of Infection and Immunity, University College London, London, United Kingdom.
Hooda Y; Child Health Research Foundation, Dhaka, Bangladesh.
Hormazabal JC; Bacteriologia, Subdepartamento de Enfermedades Infecciosas, Departamento de Laboratorio Biomedico, Instituto de Salud Publica de Chile (ISP), Santiago, Chile.
Ikhimiukor OO; Global Health Research Unit (GHRU) for the Genomic Surveillance of Antimicrobial Resistance, Faculty of Pharmacy, University of Ibadan, Ibadan, Nigeria.
Iqbal J; Department of Pediatrics and Child Health, Aga Khan University, Karachi, Pakistan.
Jacob JJ; Department of Clinical Microbiology, Christian Medical College, Vellore, India.
Jenkins C; United Kingdom Health Security Agency, London, United Kingdom.
Jinka DR; Rural Development Trust Hospital, Anantapur, India.
John J; Department of Community Health, Christian Medical College, Vellore, India.
Kang G; Department of Community Health, Christian Medical College, Vellore, India.
Kanteh A; Medical Research Council Unit The Gambia at London School Hygiene & Tropical Medicine, Fajara, Gambia.
Kapil A; All India Institute of Medical Sciences, Delhi, India.
Karkey A; Oxford University Clinical Research Unit Nepal, Kathmandu, Nepal.
Kariuki S; Centre for Microbiology Research, Kenya Medical Research Institute, Nairobi, Kenya.
Kingsley RA; Quadram Institute Bioscience, Norwich, United Kingdom.
Koshy RM; Makunda Christian Hospital, Assam, India.
Lauer AC; Centers for Disease Control and Prevention, Atlanta, United States.
Levine MM; Center for Vaccine Development and Global Health (CVD), University of Maryland School of Medicine, Baltimore, Maryland, USA, Baltimore, United States.
Lingegowda RK; Central Research Laboratory, Kempegowda Institute of Medical Sciences, Bengaluru, India.
Luby SP; Division of Infectious Diseases and Geographic Medicine, Stanford University, Stanford, United States.
Mackenzie GA; Medical Research Council Unit The Gambia at London School Hygiene & Tropical Medicine, Fajara, Gambia.
Mashe T; National Microbiology Reference Laboratory, Harare, Zimbabwe.; World Health Organization, Harare, Zimbabwe.
Msefula C; Kamuzu University of Health Sciences, Blantyre, Malawi.
Mutreja A; Cambridge Institute of Therapeutic Immunology and Infectious Disease (CITIID), University of Cambridge School of Clinical Medicine, Cambridge Biomedical Campus, Cambridge, United Kingdom.
Nagaraj G; Central Research Laboratory, Kempegowda Institute of Medical Sciences, Bengaluru, India.
Nagaraj S; Saint Johns Medical College and Hospital, Bengaluru, India.
Nair S; United Kingdom Health Security Agency, London, United Kingdom.
Naseri TK; Ministry of Health, Government of Samoa, Apia, Samoa.
Nimarota-Brown S; Ministry of Health, Government of Samoa, Apia, Samoa.
Njamkepo E; Institut Pasteur, Université Paris Cité, Paris, France.
Okeke IN; Global Health Research Unit (GHRU) for the Genomic Surveillance of Antimicrobial Resistance, Faculty of Pharmacy, University of Ibadan, Ibadan, Nigeria.
Perumal SPB; Kanchi Kamakoti CHILDS Trust Hospital, Chennai, India.
Pollard AJ; Oxford Vaccine Group, Department of Paediatrics, University of Oxford, Oxford, United Kingdom.; The NIHR Oxford Biomedical Research Centre, Oxford, United Kingdom.
Pragasam AK; Department of Clinical Microbiology, Christian Medical College, Vellore, India.
Qadri F; International Centre for Diarrhoeal Disease Research, Dhaka, Bangladesh.
Qamar FN; Department of Pediatrics and Child Health, Aga Khan University, Karachi, Pakistan.
Rahman SIA; International Centre for Diarrhoeal Disease Research, Dhaka, Bangladesh.
Rambocus SD; Microbiological Diagnostic Unit Public Health Laboratory, The University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne, Australia.
Rasko DA; Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, United States.; Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, United States.
Ray P; Post Graduate Institute of Medical Education and Research, Chandigarh, India.
Robins-Browne R; Department of Microbiology and Immunology at the Peter Doherty Institute for Infection and Immunity, The University of Melbourne, Melbourne, Australia.; Murdoch Children's Research Institute, Royal Children's Hospital, Parkville, Australia.
Rongsen-Chandola T; Centre for Health Research and Development, Society for Applied Studies, Delhi, India.
Rutanga JP; University of Rwanda, College of Science and Technology, Kigali, Rwanda.
Saha SK; Child Health Research Foundation, Dhaka, Bangladesh.
Saha S; Child Health Research Foundation, Dhaka, Bangladesh.
Saigal K; Chacha Nehru Bal Chikitsalaya, Delhi, India.
Sajib MSI; Child Health Research Foundation, Dhaka, Bangladesh.; Institute of Biodiversity, Animal Health and Comparative Medicine, University of Glasgow, Glasgow, United Kingdom.
Seidman JC; Sabin Vaccine Institute, Washington DC, United States.
Shakya J; Dhulikhel Hospital, Dhulikhel, Nepal.; Institute for Research in Science and Technology, Kathmandu, Nepal.
Shamanna V; Central Research Laboratory, Kempegowda Institute of Medical Sciences, Bengaluru, India.
Shastri J; Topiwala National Medical College, Mumbai, India.; Kasturba Hospital for Infectious Diseases, Mumbai, India.
Shrestha R; Center for Infectious Disease Research & Surveillance, Dhulikhel Hospital, Kathmandu University Hospital, Dhulikhel, Nepal.
Sia S; Research Institute for Tropical Medicine, Department of Health, Muntinlupa City, Philippines.
Sikorski MJ; Center for Vaccine Development and Global Health (CVD), University of Maryland School of Medicine, Baltimore, Maryland, USA, Baltimore, United States.; Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, United States.; Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, United States.
Singh A; Chinchpada Christian Hospital, Navapur, India.
Smith AM; Centre for Enteric Diseases, National Institute for Communicable Diseases, Johannesburg, South Africa.
Tagg KA; Centers for Disease Control and Prevention, Atlanta, United States.
Tamrakar D; Center for Infectious Disease Research & Surveillance, Dhulikhel Hospital, Kathmandu University Hospital, Dhulikhel, Nepal.
Tanmoy AM; Child Health Research Foundation, Dhaka, Bangladesh.
Thomas M; Christian Medical College, Ludhiana, Ludhiana, India.
Thomas MS; Duncan Hospital, Raxaul, India.
Thomsen R; Ministry of Health, Government of Samoa, Apia, Samoa.
Thomson NR; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, United Kingdom.
Tupua S; Ministry of Health, Government of Samoa, Apia, Samoa.
Vaidya K; University of California Davis, Davis, United States.
Valcanis M; Microbiological Diagnostic Unit Public Health Laboratory, The University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne, Australia.
Veeraraghavan B; Department of Clinical Microbiology, Christian Medical College, Vellore, India.
Weill FX; Institut Pasteur, Université Paris Cité, Paris, France.
Wright J; ESR, Institute of Environmental Science and Research Ltd., Porirua, Wellington, New Zealand.
Dougan G; Cambridge Institute of Therapeutic Immunology and Infectious Disease (CITIID), University of Cambridge School of Clinical Medicine, Cambridge Biomedical Campus, Cambridge, United Kingdom.
Argimón S; Centre for Genomic Pathogen Surveillance, Big Data Institute, University of Oxford, Oxford, United Kingdom.
Keane JA; Cambridge Institute of Therapeutic Immunology and Infectious Disease (CITIID), University of Cambridge School of Clinical Medicine, Cambridge Biomedical Campus, Cambridge, United Kingdom.
Aanensen DM; Centre for Genomic Pathogen Surveillance, Big Data Institute, University of Oxford, Oxford, United Kingdom.
Baker S; Cambridge Institute of Therapeutic Immunology and Infectious Disease (CITIID), University of Cambridge School of Clinical Medicine, Cambridge Biomedical Campus, Cambridge, United Kingdom.; IAVI, Chelsea & Westminster Hospital, London, United Kingdom.
Holt KE; Department of Infection Biology, Faculty of Infectious and Tropical Diseases, London School of Hygiene & Tropical Medicine, London, United Kingdom.; Department of Infectious Diseases, Central Clinical School, Monash University, Melbourne, Australia.
DB Label: Database : MEDLINE

원문보기: Open Access (PubMed Central) 등재 - Web of Science (SCIE) 등재 - SCOPUS 조회 - Impact Factor (JCR)

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